PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 262aa    MW: 29599.9 Da    PI: 7.5975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08157204455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Tp1g16350 157 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 204
                8*************************8....366999**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-16151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-10151208No hitNo description
PROSITE profilePS5088815.408153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15153212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANFESLSSD FQTIAMDIYS SLTQAEGQNN NNGNLQFQTF PPFSSTCLDS IFLQHRHQQQ  60
LLDFPGKSPS SDNNFSSTST LIHSYQNSVD ETKKRKALLQ TLSSSENSGV SDNLNINTTE  120
TGYSRKGKRL KKKKNQEEEI EREVVHVRAR RGQATDSHSL AERVRRGKIN ERLRCLQDIV  180
PGCYKSMGMA TMLDEIINYV QSLQNQVEFL SIKLTAASSF YDFNSETDAV DSMQRAKARE  240
AVDMGRQTRD GSTVFHLSTW SL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0052680.0BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
GenBankAY1382530.0AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankAK1172690.0AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149281.11e-143PREDICTED: transcription factor BEE 1
SwissprotQ8GZ131e-127BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A078GI841e-143A0A078GI84_BRANA; BnaA06g12520D protein
STRINGBra025910.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-112BR enhanced expression 1