PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558919.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 275aa    MW: 30655.8 Da    PI: 6.8391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29.1e-3073189199
                     EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                     f+k ltpsdv+k++rlv+pk++ae++                      e+++ l++ede g+ W ++++y+++s++yvltkGW+++v++++L++g
  XP_010558919.1  73 FEKSLTPSDVGKLNRLVIPKQHAEKYfplngsssavcrggdtaeAAAAEKGMLLRFEDEAGKCWVFRYSYWNSSQSYVLTKGWSRYVREKQLDAG 167
                     99****************************999999997777664445599******************************************** PP

                     -EEEEEE-SSSEE..EEEEE-S CS
              B3  78 DfvvFkldgrsefelvvkvfrk 99 
                     D+v F ++++++++ +++++r+
  XP_010558919.1 168 DVVFFLRHHSDDRRIFIRWRRR 189
                     ******98889999*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2970189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-3870189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-2472172No hitNo description
PfamPF023622.0E-2773189IPR003340B3 DNA binding domain
PROSITE profilePS5086312.49273190IPR003340B3 DNA binding domain
SMARTSM010192.2E-2273190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSSVNHYSRD VDQATLWWQH HRCQNDAVSP PETSETWRRN QSLNDVASSL QNDPSSSSCG  60
IEHYPPPLET LLFEKSLTPS DVGKLNRLVI PKQHAEKYFP LNGSSSAVCR GGDTAEAAAA  120
EKGMLLRFED EAGKCWVFRY SYWNSSQSYV LTKGWSRYVR EKQLDAGDVV FFLRHHSDDR  180
RIFIRWRRRG GGGVLVNTTP FSSGVATSTA PPSYHQFHHQ VHASSYPHSG GIAATEAAEN  240
QSAAMGPSSR TVRLFGVDLE CQRDHDDDMA VAADP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-447219113119DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558919.10.0PREDICTED: B3 domain-containing protein At5g06250, partial
SwissprotQ9FNI31e-75Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLV4KRK12e-76V4KRK1_EUTSA; Uncharacterized protein (Fragment)
STRINGBra005886.1-P6e-74(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-61B3 family protein