PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 230aa    MW: 25270.9 Da    PI: 6.9759
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.86.8e-37241371102
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssg. 88 
                     a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++   +s+++ +    ++++++++a++s  + 
  XP_010558868.1  24 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLNESqdlPSDPNYQIvdaKDDDNQQTAQFS--Ss 116
                     589**************************************************************66655555444543333333333333..23 PP

             TCP  89 ...........kaaksaakskksqk 102
                                +    a+k+ ++++
  XP_010558868.1 117 lvapmanldpeD----AMKTVFPTS 137
                     466666433321....223333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-3325135IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1722785IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGLKSSGPGG GEIVQVQGGH IVRATGRKDR HSKVYTAKGP RDRRVRLSAH TAIQFYDVQD  60
RLGYDRPSKA VDWLIKKAKS AIDKLNESQD LPSDPNYQIV DAKDDDNQQT AQFSSSLVAP  120
MANLDPEDAM KTVFPTSRTD SNINFHSYPH DIISRTTNLN QDLGLSLHPS FLGNSDQAGS  180
SAADQALFAT FEPNNFQRMS GWNSESTSDQ RGFLVNPSHH QASVATMLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-223285154Putative transcription factor PCF6
5zkt_B2e-223285154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558868.11e-171PREDICTED: transcription factor TCP10-like, partial
SwissprotO822771e-70TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A1J3IRA79e-75A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRINGXP_010558868.11e-170(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.18e-72TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]