PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558176.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 375aa    MW: 40817.5 Da    PI: 7.2184
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.2e-27103185271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_010558176.1 103 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnngpspgqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 185
                     689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-4698191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-35102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25104185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.71E-21105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.34E-44190293IPR014889Transcription factor DP, C-terminal
SMARTSM011386.4E-59192324IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.17E-40192307No hitNo description
PfamPF087811.7E-39193297IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTTGSNSSHN QIEDGGAKNN DNNTNPGTRS WGTAGSGQTV STSGSVGSPS SRSEHATMAT  60
PASDSTFLRM NQLDIQGDDA GSQGAVGGKK KKRGQRAVGP DKSGRGLRQF SMKVCEKVES  120
KGRTTYNEVA DELVAEFADP GNNGPSPGQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWKGLPRTS LSDIEELKTE RLALRNRIDK KAAYLQELEE QYVGLQNLVR RNGRLYSSGN  240
APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNTSP FELHDDNFVL KSMKFCERPP  300
PSDNNIPVGN NFPSGDALEG PSIVPPEAFH PHSQPQPQPR LIPTPRADPS GTLPLRAPES  360
PPIPGIIKAR VKPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3496190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558176.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-173DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD7LWN70.0D7LWN7_ARALL; Uncharacterized protein
STRINGXP_010558176.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-159Transcription factor DP