PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555962.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 365aa    MW: 38391.8 Da    PI: 6.4365
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.12.8e-2539167389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tie       p  + +tgt++++a+++  ++  +ss+s+ s++        
  XP_010555962.1  39 PAKKSTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEA------PGLIPATGTGTIPANFSsLNVPIRSSGSTLSAPpsrsaplf 127
                     689*******************************************95......*********99999777644444444443333344445666 PP

             TCP  89 .......................................k 89 
                                                            +
  XP_010555962.1 128 galglsqhhhhpydgpgsafgshappflwshlqqqqqqlD 167
                     6666666666777777766666554444443332222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2743208IPR005333Transcription factor, TCP
PROSITE profilePS5136915.7364498IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDIADGRNND GGGSAAAASR QQVDASLATT SSNSTAVVPA KKSTKDRHTK VDGRGRRIRM  60
PALCAARVFQ LTKELGHKSD GETIEAPGLI PATGTGTIPA NFSSLNVPIR SSGSTLSAPP  120
SRSAPLFGAL GLSQHHHHPY DGPGSAFGSH APPFLWSHLQ QQQQQLDNQN HRLTATGTDQ  180
AAETIPGSDD DNFGRKRYRS DDLSKENDDR NQNHQTEQVN KTLKNSEISP AEAAAAALWA  240
LTPASRASGN TFWMLPVTTA SVIPSALGSG QNPAVESSSA AACHRAQMWP FANPPPPECR  300
GLGMPDSNLG MLAALNAAYA RRGSNANANA NANSNAGEMN NKEPQPQQSG PDDDSGDDYS  360
NNSEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555962.10.0PREDICTED: transcription factor TCP8-like
SwissprotQ9C5181e-94TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A087HFK91e-103A0A087HFK9_ARAAL; Uncharacterized protein
STRINGAT1G58100.13e-92(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-77TCP family protein