PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553936.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 432aa    MW: 49061.3 Da    PI: 7.4023
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.89.3e-391122822133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 
                     ++kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt+eWLl+++ +ai e++                                 
  XP_010553936.1 112 PVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLEWLLKKSRKAIREAVVVhtkkvnngefnganvedecygnpigdkggee 206
                     68***********************************************************9998888888888855555555544444333222 PP

             TCP  66 ...ssssaseceaesssssasnsssg.........................kaaksaakskksqksaasalnlak.esrakarararertrekmr 131
                        +                     +                         k+ +   + +++++++++ +n+    sr+k+r+ a+e  r+k  
  XP_010553936.1 207 eddE---------------------EdeyedksfvsgssseycedvvyhetKKPEIGGSVRREKRKKTELSNIPSkGSRSKSRESAKEIARDKIG 280
                     1110.....................012223344445555678888887653333333444444444445554444999*******998888876 PP

             TCP 132 ik 133
                      +
  XP_010553936.1 281 SR 282
                     65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-38113278IPR005333Transcription factor, TCP
PROSITE profilePS5136935.371114172IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MFSSNNHNHN ENGVYPLALC LSPFSSHDGN ISASYNHHHQ HHHNHQHHNQ QNLHPNDPLM  60
AAAHNHQFSS SIMPESLINY MAFSSNNVMM EQNLVYGGCS DQVEVLRGTK KPVKKDRHSK  120
IHTAQGLRDR RVRLSIGIAR QFFDLQDMLG FDKASKTLEW LLKKSRKAIR EAVVVHTKKV  180
NNGEFNGANV EDECYGNPIG DKGGEEEDDE EDEYEDKSFV SGSSSEYCED VVYHETKKPE  240
IGGSVRREKR KKTELSNIPS KGSRSKSRES AKEIARDKIG SRNIDHPATA YEISQSQFLD  300
SLRSTRVNER EKRLSTASVH GQDKTYSLYE NRTEELNRFL GQYSANQESV SVRRKIKPSM  360
PSVLSYDQQN GGVTLKDQSN NINNITIIPQ NWDIYDQNPF VDPPFCALSN MNMSTVNGET  420
YIAKKIMHQA PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-15119169151Putative transcription factor PCF6
5zkt_B8e-15119169151Putative transcription factor PCF6
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553936.10.0PREDICTED: transcription factor TCP1-like isoform X1
STRINGXP_010553936.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-71TCP family protein