PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553392.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 219aa    MW: 25551.5 Da    PI: 7.6858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553392.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.15.4e-3146154199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae+h            g   e++  l +ede+g  W+++++y+++s++yvltkGW +Fvk+++L +gD+v F+
  XP_010553392.1  46 FEKPLTPSDVGKLNRLVIPKQHAERHfplananananaG--AEKGHVLCFEDEEGWPWRFRYSYWNSSQSYVLTKGWCRFVKEKHLGAGDVVFFH 138
                     99*****************************99999633..457789************************************************ PP

                     E-SSSEE..EEEEE-S CS
              B3  84 ldgrsefelvvkvfrk 99 
                     ++++++++l++++ r+
  XP_010553392.1 139 RHRTDCRRLFIGWQRR 154
                     9888*******99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-3940155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-3242153IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-2944145No hitNo description
PfamPF023629.7E-2946154IPR003340B3 DNA binding domain
SMARTSM010195.7E-2446155IPR003340B3 DNA binding domain
PROSITE profilePS5086312.68946155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSINQYTTDL TDHTFMWQHQ QQYHMMESNL QNDIVFDEDT TKEPLFEKPL TPSDVGKLNR  60
LVIPKQHAER HFPLANANAN ANAGAEKGHV LCFEDEEGWP WRFRYSYWNS SQSYVLTKGW  120
CRFVKEKHLG AGDVVFFHRH RTDCRRLFIG WQRRGGAIGR TSSSSSESSR RLRGHIQYYD  180
QPEYLRHAGK TLESQSVGMT NSKTLRLFGV DMECQLESD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-474316611129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553392.11e-168PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ22e-77Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A087H3015e-75A0A087H301_ARAAL; Uncharacterized protein
STRINGAT2G36080.16e-75(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.12e-74B3 family protein