PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 259aa    MW: 29438.6 Da    PI: 9.0329
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.91.3e-21281001471
         E2F_TDP  14 lklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +l++k e+ +i+t++e+a++++s+               ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_010553040.1  28 SSLCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 100
                     3589999999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-2910102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-2113100IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.75E-1428101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-1628100IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.9E-41113257IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-36115233No hitNo description
PfamPF087815.2E-33116239IPR014889Transcription factor DP, C-terminal
CDDcd144581.22E-29118213IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKMKMEKKGQ SRSAGGGLRQ FSVLDLLSSL CQKLEAKKII TYKEIADDII SDFGTMQNDT  60
LGSSEEFNEK NIRRRVYDAL NVFMALEIIT RDKKEIRWKG LLVTCKKDVE EVKYMTFQAE  120
RTKLVSSVQK KAAYLKELEE KVSSSQNLMS RNQQVVEKSK GPAEGFTLPF ILVQTSPHAT  180
VEVEISEDMQ LVHFDFSSTP FTLHDDGYIL KLMHQQKLQQ KTRHHHPSQH SSAHSSSTSV  240
FSATTGPVCW NTYSASTTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-227101389PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553040.10.0PREDICTED: transcription factor-like protein DPA isoform X5
SwissprotQ9FNY31e-114DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9411e-115V4L941_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.21e-113(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.35e-97Transcription factor DP