PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 275aa    MW: 31311.7 Da    PI: 6.7926
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.95.2e-21461161671
         E2F_TDP  16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +++k e+ +i+t++e+a++++s+               ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_010553039.1  46 VCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 116
                     899*9999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.1E-1835116IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-1444117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-2745118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.4E-1646116IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.9E-41129273IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.92E-36131249No hitNo description
PfamPF087816.1E-33132255IPR014889Transcription factor DP, C-terminal
CDDcd144588.75E-30134229IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPCYSKQEKW NPLSTTGSFA GLEISSFVLI LILDDNINEL LIVFPVCQKL EAKKIITYKE  60
IADDIISDFG TMQNDTLGSS EEFNEKNIRR RVYDALNVFM ALEIITRDKK EIRWKGLLVT  120
CKKDVEEVKY MTFQAERTKL VSSVQKKAAY LKELEEKVSS SQNLMSRNQQ VVEKSKGPAE  180
GFTLPFILVQ TSPHATVEVE ISEDMQLVHF DFSSTPFTLH DDGYILKLMH QQKLQQKTRH  240
HHPSQHSSAH SSSTSVFSAT TGPVCWNTYS ASTTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-20441171789PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553039.10.0PREDICTED: transcription factor-like protein DPA isoform X4
SwissprotQ9FNY31e-102DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9411e-102V4L941_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.21e-100(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.34e-85Transcription factor DP