PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 298aa    MW: 33711 Da    PI: 8.0266
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.51.7e-21671391471
         E2F_TDP  14 lklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +l++k e+ +i+t++e+a++++s+               ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_010553036.1  67 SSLCQKLEAkKIITYKEIADDIISDfgtmqndtlgsseefNEKNIRRRVYDALNVFMALEIITR-DKKEIRWKG 139
                     3589999999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-2949141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-2152139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.01E-1367140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.8E-1667139IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.9E-41152296IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-36154272No hitNo description
PfamPF087811.0E-32155278IPR014889Transcription factor DP, C-terminal
CDDcd144581.38E-29157252IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDIGCLGEKD SPFSTPKRHN HTSTLDKTPE RRKLALDNEN ENGSEKKGQS RSAGGGLRQF  60
SVLDLLSSLC QKLEAKKIIT YKEIADDIIS DFGTMQNDTL GSSEEFNEKN IRRRVYDALN  120
VFMALEIITR DKKEIRWKGL LVTCKKDVEE VKYMTFQAER TKLVSSVQKK AAYLKELEEK  180
VSSSQNLMSR NQQVVEKSKG PAEGFTLPFI LVQTSPHATV EVEISEDMQL VHFDFSSTPF  240
TLHDDGYILK LMHQQKLQQK TRHHHPSQHS SAHSSSTSVF SATTGPVCWN TYSASTTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2254140989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553036.10.0PREDICTED: transcription factor-like protein DPA isoform X2
RefseqXP_010553037.10.0PREDICTED: transcription factor-like protein DPA isoform X2
SwissprotQ9FNY31e-124DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9411e-126V4L941_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.21e-124(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-106Transcription factor DP