PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552533.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GeBP
Protein Properties Length: 362aa    MW: 40208.4 Da    PI: 8.7597
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57391.68.8e-29161260298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifels 92 
                     l++r++s eDei+lL+G+++f+++ g + +d +d+f+ fv+k+++f+++k q+++Ki+rL+k+f+k v+k     k+g++ +fsk+hdq++f+ls
  XP_010552533.1 161 LIERIFSHEDEIALLKGILEFASRVG-NIYDCMDEFCIFVNKHMNFEANKAQISNKIKRLRKRFEKSVEKsiwkGKKGEDCVFSKAHDQESFDLS 254
                     578******************99999.99****************************************999989******************** PP

          DUF573  93 kkiWgs 98 
                     kkiWg+
  XP_010552533.1 255 KKIWGT 260
                     ****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.0E-25163259IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPKHPENSS HSVQKEAETV LVAAPKARES KAGSMASSGR ADLVENPHTS STEEEEDDEE  60
YSSESEGASG SEAESKSESE SERIKHDAAK PVAAKQAVEA REVEKPRSVV KETRRAAAKR  120
PMTVLEAKGN ELNPAKKMKG VQEPEEHKGK KSSADASKKQ LIERIFSHED EIALLKGILE  180
FASRVGNIYD CMDEFCIFVN KHMNFEANKA QISNKIKRLR KRFEKSVEKS IWKGKKGEDC  240
VFSKAHDQES FDLSKKIWGT NGVMQSTTKS TKGQGKNWKP RVLAGKDVIP LLDAKNVVGI  300
DEFAMVEGWE MAEGSTKRKL EATWKKIQAL QMELSLLKTK FAGKATNLIF DALKANGSHF  360
DN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552533.10.0PREDICTED: mediator-associated protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.18e-41DNA-binding storekeeper protein-related transcriptional regulator