PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551161.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 363aa    MW: 41151.1 Da    PI: 8.6449
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.22.9e-421222882136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 
                     a k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+ WLl+qakp+ik+l+++                               
  XP_010551161.1 122 ASKTDRHSKIYTAKGLRDRRMRLSLEVAREFFGLQDMLGFDKASKTVSWLLTQAKPEIKKLARSppqqfnnglsseesqtrrpdL---------- 206
                     789*************************************************************544444443332222222220.......... PP

             TCP  77 sssssasnsssg.................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                +                                 ++++++ k+k+sq+++   +++ k+ r kar+ra+ert+ek ++k+++
  XP_010551161.1 207 -----------DevasgwigqegsnmnkdmptnlcevasaatkemEEKSAKDKKKRSQSRNPILRKIPKDARVKARERAKERTKEKLMMKERS 288
                     ...........1233334444444456677777777777777775444444466666666667799999********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-42123284IPR005333Transcription factor, TCP
PROSITE profilePS5136933.838124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.138264281IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MANTNDLVFW PYNDHSSRIL PAFIPSPSFH GILSNPNPKP ISEAIPQFEF DPESLYAVFL  60
QPNNENDNRN PYHHYQTSLN LLPLNKTVED QSFDASETNV RMEDSKEISN HRVPTQASKK  120
RASKTDRHSK IYTAKGLRDR RMRLSLEVAR EFFGLQDMLG FDKASKTVSW LLTQAKPEIK  180
KLARSPPQQF NNGLSSEESQ TRRPDLDEVA SGWIGQEGSN MNKDMPTNLC EVASAATKEM  240
EEKSAKDKKK RSQSRNPILR KIPKDARVKA RERAKERTKE KLMMKERSAS EAVVHHMKTS  300
DVNDHLGTNS NWSSFETGED SVQGMEEPSP SNGFVACNNT GMSDVAQESM TIINKWSPFS  360
IFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551161.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551161.10.0PREDICTED: transcription factor TCP18-like isoform X1
RefseqXP_019058994.10.0PREDICTED: transcription factor TCP18-like isoform X1
TrEMBLR0G5221e-67R0G522_9BRAS; Uncharacterized protein
TrEMBLR0G5F61e-67R0G5F6_9BRAS; Uncharacterized protein
STRINGXP_010551161.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-53TCP family protein