PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551125.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 235aa    MW: 27127.9 Da    PI: 4.7547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.38.8e-5561351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgkd++v+
  XP_010551125.1   6 LPPGFRFHPTDEELVNYYLKRKINGEEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVT 99 
                     79****************************.99**************85335566888************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+ +++++g+kktLv+y+grap+g +tdWvmheyrl
  XP_010551125.1 100 SQsQNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 135
                     9877788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-644159IPR003441NAC domain
PROSITE profilePS5100561.5476158IPR003441NAC domain
PfamPF023652.4E-307135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING EEIELDIIPE VDLYKCEPWE LADKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS QSQNRAIGMK KTLVYYRGRA  120
PQGIRTDWVM HEYRLDDKDD LDSSPLQDSY ALCRVFKKNG ICSEVEDQQQ RGECSSFTLM  180
ENSNNEYETM SSACPEDDDK DDSWMQFITD DAWDSNASAA VMGSDHGHGH GQGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53115912166NO APICAL MERISTEM PROTEIN
1ut4_B2e-53115912166NO APICAL MERISTEM PROTEIN
1ut7_A2e-53115912166NO APICAL MERISTEM PROTEIN
1ut7_B2e-53115912166NO APICAL MERISTEM PROTEIN
4dul_A2e-53115912166NAC domain-containing protein 19
4dul_B2e-53115912166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551125.11e-178PREDICTED: NAC domain-containing protein 86
SwissprotQ9FFI51e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLV4M0371e-135V4M037_EUTSA; Uncharacterized protein
STRINGXP_010551125.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-127NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]