PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550818.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 301aa    MW: 32696.2 Da    PI: 6.9106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16224260135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_010550818.1 224 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 260
                     *****99999************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.43977112IPR010399Tify domain
SMARTSM009795.5E-1277112IPR010399Tify domain
PfamPF062001.6E-1281111IPR010399Tify domain
PROSITE profilePS5101712.987148190IPR010402CCT domain
PfamPF062032.1E-15148190IPR010402CCT domain
SMARTSM004012.5E-13218271IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.605218279IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-13220283No hitNo description
Gene3DG3DSA:3.30.50.109.7E-16222265IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-15223275No hitNo description
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14224260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGLHGSDAR MHMGDAQDPM HVQYEHHGLH HINNGNGMVD EHADGGATGE MNEGVETDIP  60
SHPGNLSDSR GEVVDRGTEN GDQLTLSFQG QVYVFDSVSA EKVQAVLLLL GGREVPQAVS  120
TALGSTTPQN NRALVLSGTP QRFSVPQRLA SLVRFREKRK GRNFDKKIRY TVRKEVALRM  180
QRNKGQFTSA KSSNDDSASA GSSWGSNHTW GAEGSDSQTQ EISCRHCGIS EKSTPMMRRG  240
PEGPRTLCNA CGLMWANKGT LRDLSKATPP AAQNMLVIRN EDENLEADQM VRVAGNISNS  300
S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550818.10.0PREDICTED: GATA transcription factor 28
RefseqXP_010550819.10.0PREDICTED: GATA transcription factor 28
RefseqXP_010550820.10.0PREDICTED: GATA transcription factor 28
RefseqXP_010550821.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-174GAT28_ARATH; GATA transcription factor 28
TrEMBLR0IMP11e-180R0IMP1_9BRAS; Uncharacterized protein
STRINGXP_010550818.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-151ZIM-LIKE 2