PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 309aa    MW: 34606.3 Da    PI: 6.7416
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.81.3e-36111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+C+++C+lapyfp+eqpk f nvh+lFG+s ++k+l++lp+++r++am+s+++++ +r r Pv+G++g+ l+lq  +  +++el 
  XP_010550796.1  11 ACAACKYQRRRCSSECPLAPYFPSEQPKLFHNVHRLFGVSSLVKILQRLPPSQRPEAMKSIIFQSLVRDRSPVHGCLGLTLQLQYLIWLSQQELR 105
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     l++++
  XP_010550796.1 106 LVNAR 110
                     98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.39710111IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-3511108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTVKGGGTNG ACAACKYQRR RCSSECPLAP YFPSEQPKLF HNVHRLFGVS SLVKILQRLP  60
PSQRPEAMKS IIFQSLVRDR SPVHGCLGLT LQLQYLIWLS QQELRLVNAR LHLFRQQQQQ  120
PRDAHPDNDH HHPSEDNHVS SQQQLDLGMV IPVKNSHACS SSSSSSYSSS ASPPLPFFSP  180
LPPPQQQQQV SYFNSCSDVN GYSSAENIPN TYNPYGGFCH YNGDDQRNNV TTIQSQHLNP  240
EIVSQDYDEI HQFFDIIDDR QSFVEETKEA YASSSSEGSL KGTTTQPLEH VGENELRSAA  300
TRFSLTSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2471117111LOB family transfactor Ramosa2.1
5ly0_B1e-2471117111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550796.10.0PREDICTED: LOB domain-containing protein 27
SwissprotQ9STS66e-78LBD27_ARATH; LOB domain-containing protein 27
TrEMBLR0HMD71e-96R0HMD7_9BRAS; Uncharacterized protein
STRINGXP_010550796.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.18e-71LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]