PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 389aa    MW: 43736.7 Da    PI: 9.1598
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.36.2e-242186171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll+++fl+l+++ e +++ l+++a +L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  XP_010550672.1 21 RKQKSLGLLCTNFLTLYNRDEIEMIGLDDAAAKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 86
                    79*****************999************...**..****************************98 PP

2E2F_TDP802.2e-25156236171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL+lltq+f+kl+ +se+++++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k++++w g
  XP_010550672.1 156 RREKSLGLLTQNFVKLFVCSEAQVISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtsdTRKPAFKWLG 236
                     689**************************************999*************************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-261788IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-162084IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.5E-292186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.9E-212286IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.1E-24153237IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.5E-33156236IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.59E-14158237IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-20158236IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPHSSTSTPE SSSSRHHSYS RKQKSLGLLC TNFLTLYNRD EIEMIGLDDA AAKLGVERRR  60
IYDIVNVLES VGVLTRRAKN QYTWKGFSAI PGALKELKDE GVKDTFHRFY TNENVKVSDD  120
EDDEEDTSQP HSSSQNDSSK PESLPNSSAS SKIDNRREKS LGLLTQNFVK LFVCSEAQVI  180
SLDEAAKLLL GDAHNTSIMR TKVRRLYDIA NVLSSMNLIE KTHTSDTRKP AFKWLGYSGQ  240
PLHIPSNDLK QSESRKRVFG TDLTNTNVKR NKPASFTHES TSEKMHRMGK QTVAESSSNK  300
TSKVPESVHG TRSYQFGPFA PASVTSHHSV ALDNSSKSVT DLENLASVHR PCYQNQALRD  360
LFAHYMEAWK SWYSEVARKN PLAETSQHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A8e-42202283228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550672.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ40.0E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLD7LRJ40.0D7LRJ4_ARALL; Uncharacterized protein
STRINGXP_010550672.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63042743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.20.0DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]