PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550606.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 377aa    MW: 40101.2 Da    PI: 7.3734
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.56.7e-4069185289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +       
  XP_010550606.1  69 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISLPsrfhsaa 163
                     789******************************************************************99976666666666333335554444 PP

             TCP  89 .....................k 89 
                                          +
  XP_010550606.1 164 aaayvnpnipfsstsallqqqQ 185
                     4455554444433333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-4073253IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92375129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMDGGNGHRP TFPFQLLGKR DSDDKPSSTA ASSIFSFEQQ HQQPPQTQTQ TQTQTQPQES  60
ATAAGKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSISLPSRFH SAAAAAYVNP NIPFSSTSAL  180
LQQQQRGYNI HGRTTSSASL FPGLDTFVPT TTSFLDFHNP TSSHLLSYPS GIQAKQEGAS  240
SLEDESEEKK RRVETTTDLH QHHHQSYALQ SSNSGPTTAQ IPGNFWMVAA ASNHHAGAGV  300
LVSGGSGGGD PIWAFPSVNS ASSSTTLSSG LHLMNFAAVA PPQMAVLSGE HISSMINTIN  360
EDNGGGDGES DHHIKGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550606.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z001e-88TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A087GW145e-98A0A087GW14_ARAAL; Uncharacterized protein
STRINGBra018126.1-P2e-93(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.13e-76TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14