PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548826.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 181aa    MW: 20894.2 Da    PI: 5.0693
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.6e-34101251128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d++ ++PwdLp k+ +e ++wyf+s++ +        nrat+sgyW++   d++++++
  XP_010548826.1  10 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLFPYDPWDLPGKAMEEGRQWYFYSRKTR--------NRATSSGYWRSMEMDEPIFTS 95 
                     79*************************999.99***************77778899******9865........89****************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk L+fy g++p+    +W+m+ey+l
  XP_010548826.1  96 sGHKKVGVKKYLTFYLGESPT----NWLMQEYSL 125
                     67888**********888875....*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-455161IPR003441NAC domain
PROSITE profilePS5100542.8410161IPR003441NAC domain
PfamPF023654.7E-2311125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGDGYGNANL PPGFRFYPTD EELVVHFLHR KASLLPCHPD VIPDLDLFPY DPWDLPGKAM  60
EEGRQWYFYS RKTRNRATSS GYWRSMEMDE PIFTSSGHKK VGVKKYLTFY LGESPTNWLM  120
QEYSLLDSPS SKRGSRTSSS TSSSSHRTDY SKWVICRVYE QNSNEEDDDG TELSCLDEVF  180
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-38916616170NO APICAL MERISTEM PROTEIN
1ut4_B2e-38916616170NO APICAL MERISTEM PROTEIN
1ut7_A2e-38916616170NO APICAL MERISTEM PROTEIN
1ut7_B2e-38916616170NO APICAL MERISTEM PROTEIN
4dul_A2e-38916616170NAC domain-containing protein 19
4dul_B2e-38916616170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548826.11e-134PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK65e-94NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A078H0M46e-95A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBLA0A398ANP36e-95A0A398ANP3_BRACM; Uncharacterized protein
TrEMBLA0A3P6AL416e-95A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBLM4ESY56e-95M4ESY5_BRARP; Uncharacterized protein
STRINGXP_010548826.11e-133(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-89xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]