PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GeBP
Protein Properties Length: 456aa    MW: 49668.6 Da    PI: 5.2369
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.22.2e-37136233297
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++++ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +fe+skk
  XP_010548762.1 136 LFQRLWTDEDEIELLRGFLEYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKINSGKEVFFKSPHDQATFEISKK 230
                     79*******************888999999999************************************************************** PP

          DUF573  95 iWg 97 
                     iW 
  XP_010548762.1 231 IWS 233
                     **6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-34137233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDEAKGKDPS PLLALCPESR VEISSRNFGS SDSDEDLREN DDVVIPEGND ADEDDPEEDL  60
NSPSTSSLAV VSAVSTATAV ISGAEAMASP TAAVTVALPA GSAVAVAAIP VDSDQKWHHM  120
TEIVQQRAAL DDSRRLFQRL WTDEDEIELL RGFLEYMTTH RGSSSHPPDT APFYEQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMSKINS GKEVFFKSPH DQATFEISKK IWSHTGKIIG  240
FEDNNVLDFE ETNNHHLQHQ HHVNTTNGNS TFNNPSANLN MEIDAENGFE KKATMSNSSG  300
SRKRSRSRIG KMEEDKPITP CDGHVPNAAS NINLNENVTG AGGNLAGLIE ETVKNCVSPI  360
IKEMMNGTTA MMMAAVGGLP GAGGHGLGTL SLSPITMPPL NLGIGGGGGK GIMDERWRRQ  420
QMLELEVYSR RLELVQEQIR VALHELRTMP SSGGGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302307KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548762.10.0PREDICTED: uncharacterized protein LOC104820088
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__469__AT3G04930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-140DNA-binding storekeeper protein-related transcriptional regulator