PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 249aa    MW: 26887.3 Da    PI: 7.1937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005193115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  XP_010547550.1  93 YKCTVCHKTFPSYQALGGHKTSH 115
                     9***********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-793115No hitNo description
PROSITE profilePS5015711.09493120IPR007087Zinc finger, C2H2
SMARTSM003550.006893115IPR015880Zinc finger, C2H2-like
PfamPF139129.0E-1493117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-7147174No hitNo description
PfamPF139125.7E-11151176IPR007087Zinc finger, C2H2
PROSITE profilePS501578.933152174IPR007087Zinc finger, C2H2
SMARTSM003550.81152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MALDALNSPT STATAAPPLL RCRDEAEAEN LETWTKRKRT KRQRLDDQST THNKSTTPPS  60
EEEYLALCLL MLARGSRHDP SPPPPRPSNH HGYKCTVCHK TFPSYQALGG HKTSHRKPSP  120
GSDDQSNSNS NNNISSGNNN SAVGGGQSGR THTCSICFKA FPSGQALGGH KRCHYDGSNG  180
NGSSYIRNGD GDGDERSLWE SVKEESSPSH RGFDLNLPAE LELVPAVLAG DDPLGKSQLS  240
GDEDRHHGH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547550.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547550.10.0PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-66AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A1J3CGS18e-71A0A1J3CGS1_NOCCA; Zinc finger protein AZF1 (Fragment)
STRINGXP_010547550.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-48zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]