PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 193aa    MW: 22152.4 Da    PI: 4.6138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.21.9e-33111261128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wy++s++         +nr t++gyW++   d++++++
  XP_010546353.1  11 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKAMGEGRQWYYYSRKT--------QNRETRNGYWRSMEMDEPIFTS 96 
                     79*************************999.99***************77778899*****9974........588999*************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk L+fy g++p+    +W+m+ey+l
  XP_010546353.1  97 sGNRKVGVKKYLTFYLGDSPT----SWLMQEYSL 126
                     78889**********988876....9******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4410162IPR003441NAC domain
PROSITE profilePS5100541.25611162IPR003441NAC domain
PfamPF023657.8E-2212126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGDGYGSNGN LPPGFRFYPT DEELVVHFLH RKASLLPCHP DVIPDLDLYP YDPWDLPGKA  60
MGEGRQWYYY SRKTQNRETR NGYWRSMEMD EPIFTSSGNR KVGVKKYLTF YLGDSPTSWL  120
MQEYSLPDSS SGRSSSKRGI RSSGSSHRTD YGKWVLCRVY EQNSNEEDDD GTELSCLDEV  180
FLSLDDLDEV SLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-351016716170NO APICAL MERISTEM PROTEIN
1ut4_B5e-351016716170NO APICAL MERISTEM PROTEIN
1ut7_A5e-351016716170NO APICAL MERISTEM PROTEIN
1ut7_B5e-351016716170NO APICAL MERISTEM PROTEIN
3swm_A5e-351016719173NAC domain-containing protein 19
3swm_B5e-351016719173NAC domain-containing protein 19
3swm_C5e-351016719173NAC domain-containing protein 19
3swm_D5e-351016719173NAC domain-containing protein 19
3swp_A5e-351016719173NAC domain-containing protein 19
3swp_B5e-351016719173NAC domain-containing protein 19
3swp_C5e-351016719173NAC domain-containing protein 19
3swp_D5e-351016719173NAC domain-containing protein 19
4dul_A5e-351016716170NAC domain-containing protein 19
4dul_B5e-351016716170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546353.11e-141PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK61e-101NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A078H0M41e-101A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBLA0A398ANP31e-101A0A398ANP3_BRACM; Uncharacterized protein
STRINGXP_010546353.11e-140(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-85xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]