PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545325.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 400aa    MW: 44923.3 Da    PI: 7.4509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.11.5e-35411831128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                     lp+G++F+Ptd+el+ e+L++kv+g++        +   +    +i+   +i++++P++Lp  v+ +  + +fF++++k+y+tg+rk+r+     
  XP_010545325.1  41 LPAGMKFDPTDQELI-EHLEAKVKGNDghcrshplI---DefipTIQGEdGICYTHPQKLP-GVTRDGLSRHFFHRQSKAYTTGTRKRRKingds 130
                     799************.99*********776665543...144334776646**********.555666799******************856665 PP

             NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyrl 128
                      +++ +W++tgk++ v++ +g+ +g+kk+Lv+y+  g+++++ekt+Wvmh+y+l
  XP_010545325.1 131 gAAETRWHKTGKTRLVMV-NGQRKGCKKILVLYEnfGKNRRPEKTSWVMHQYHL 183
                     555889************.9999**********6336999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-3934202IPR003441NAC domain
PROSITE profilePS5100533.06441202IPR003441NAC domain
PfamPF023652.7E-1642183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKKSNSDLIG SKLEEHGFLG SNHCPGCGHK LQIAKPDWMG LPAGMKFDPT DQELIEHLEA  60
KVKGNDGHCR SHPLIDEFIP TIQGEDGICY THPQKLPGVT RDGLSRHFFH RQSKAYTTGT  120
RKRRKINGDS GAAETRWHKT GKTRLVMVNG QRKGCKKILV LYENFGKNRR PEKTSWVMHQ  180
YHLGVDEEER DGELVVSKIF YQTQPRQCGW PHDNIDLPRM INGTRSITSK EMGTATDARV  240
YSRVGDDISA VDFSRVMPFR NGFDHHECEN NGGSSSSSSS SHHHPYLMHD HGHYHQHHQL  300
GAMRSGLHIS SSSSSSSLHP STIRTIMSHS ALEHNLVLNA DEQSVNVPGI ILPNMPFQQE  360
YLEGRCDSGL EELIMGCNSA TFIKDGNSEP NPLEAEWSKY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545325.10.0PREDICTED: NAC domain-containing protein 78 isoform X1
SwissprotQ9M0F81e-113NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A067EL131e-133A0A067EL13_CITSI; Uncharacterized protein
STRINGXP_010545324.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-116NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]