PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 429aa    MW: 46448.8 Da    PI: 6.1287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.7e-063203581154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_010544250.1 320 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 358
                     5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-6305363No hitNo description
PROSITE profilePS5088812.493309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11319374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9323366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGDEFSNSGN GNWWKASTSS SSSTCLSPGI GCGTLGGFGW APETTPENIN KERSSSIESG  60
GSVVFLDHKL HHDPSSDHHQ HVQMIGLGLS SQPFDQWNQS LLRSDNKAET SFRVMVNSNA  120
NASTDVSMNA SSSYQQESGS SQASLWRDSS ANVEFKTQLS NRGFFLDHTQ FSPHASSSDS  180
TVTCQSFAMD NSSTTLYSNP NSSSNVFQGT FLGSDQPDRN QSSSLSYSQY GNFGLSPLRF  240
SNNTTFWNPT AAAHDVSPRF FPAAALQSPE IQAPSFEEKP KSVPEIRDPS TVAAKRSGGG  300
QPAAKRSKNE AASPSPTFKV RKEKMGDRIA ALQQLVSPFG KTDAASVLSE AIEYIKFLHQ  360
QVAALSSPYL KTGASLQQQQ ICDQSKDLEE PEQDLRSRGL CLVPVSSTFP VTHDTTVDFW  420
TPTFGGSFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544250.10.0PREDICTED: transcription factor bHLH123-like
SwissprotQ8GXT31e-138BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078G2G81e-146A0A078G2G8_BRANA; BnaA05g20270D protein
STRINGBra035761.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-137bHLH family protein