PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543925.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 182aa    MW: 20411.3 Da    PI: 6.8778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.91.3e-3070173187
                     EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                     f+k ltpsdv+k++rlv+pk++ae++                 +   e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD
  XP_010543925.1  70 FEKSLTPSDVGKLNRLVIPKQHAEKYfplngsssavsgggcdgDTAAEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGD 164
                     99****************************99999999999875556699********************************************* PP

                     EEEEEE-SS CS
              B3  79 fvvFkldgr 87 
                     +v F+++++
  XP_010543925.1 165 VVFFQRHRS 173
                     *****7654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-3861174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-2869173IPR015300DNA-binding pseudobarrel domain
CDDcd100178.87E-2769175No hitNo description
SMARTSM010191.7E-2170179IPR003340B3 DNA binding domain
PROSITE profilePS5086313.33870182IPR003340B3 DNA binding domain
PfamPF023621.5E-2770173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSVNHYSRD VNHSTTLWWQ HQRQNDAIPP PPETAASTWW RNQPQNDVVP SSQNDPSTCT  60
SDHHQLESLF EKSLTPSDVG KLNRLVIPKQ HAEKYFPLNG SSSAVSGGGC DGDTAAEKGM  120
LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKQL DAGDVVFFQR HRSAGGDATA  180
VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-446717011102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543925.11e-136PREDICTED: B3 domain-containing protein At5g06250-like, partial
SwissprotQ9FNI32e-58Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLV4KRK11e-63V4KRK1_EUTSA; Uncharacterized protein (Fragment)
STRINGscaffold_301330.12e-56(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.24e-60B3 family protein