PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543729.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-X1
Protein Properties Length: 882aa    MW: 98169 Da    PI: 8.3321
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31e-05245261420
        zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                     H+C+++CH G CppC++
  XP_010543729.1 245 HRCKEICHDGACPPCRE 261
                     ***************85 PP

2zf-NF-X116.22.4e-05349368119
        zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                     CG H+C   CH+GpC + C+
  XP_010543729.1 349 CGYHRCPDRCHRGPCLEtCR 368
                     *****************997 PP

3zf-NF-X117.21.1e-05402421120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C + C+ G+CppC++
  XP_010543729.1 402 CGRHACRRRCCDGDCPPCSE 421
                     ******************85 PP

4zf-NF-X116.22.4e-05423447119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkC ++CH G C pCp
  XP_010543729.1 423 CGrrlrcrNHKCPSPCHQGACAPCP 447
                     777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.17E-575149No hitNo description
PROSITE patternPS01359080143IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.59480144IPR001841Zinc finger, RING-type
CDDcd060085.30E-5178226No hitNo description
SMARTSM004386190208IPR000967Zinc finger, NF-X1-type
PfamPF014221190207IPR000967Zinc finger, NF-X1-type
CDDcd060084.65E-7232280No hitNo description
SMARTSM004389.0E-4242261IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013244260IPR000967Zinc finger, NF-X1-type
CDDcd060083.41E-5285325No hitNo description
SMARTSM004380.86295314IPR000967Zinc finger, NF-X1-type
PfamPF014226.8295313IPR000967Zinc finger, NF-X1-type
CDDcd060082.83E-8339388No hitNo description
SMARTSM004380.082349369IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015349368IPR000967Zinc finger, NF-X1-type
CDDcd060087.18E-7392440No hitNo description
SMARTSM004380.013402421IPR000967Zinc finger, NF-X1-type
PfamPF014228.6E-4402420IPR000967Zinc finger, NF-X1-type
CDDcd060084.62E-10419467No hitNo description
PfamPF014220.0089423447IPR000967Zinc finger, NF-X1-type
SMARTSM004380.044429448IPR000967Zinc finger, NF-X1-type
PfamPF01422110475482IPR000967Zinc finger, NF-X1-type
SMARTSM0043842486507IPR000967Zinc finger, NF-X1-type
PfamPF014227.5496506IPR000967Zinc finger, NF-X1-type
SMARTSM00438130515560IPR000967Zinc finger, NF-X1-type
PfamPF0142269515524IPR000967Zinc finger, NF-X1-type
SMARTSM0043824597638IPR000967Zinc finger, NF-X1-type
PfamPF014220.14597607IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038644662IPR000967Zinc finger, NF-X1-type
PfamPF014220.12645661IPR000967Zinc finger, NF-X1-type
SMARTSM0043825707728IPR000967Zinc finger, NF-X1-type
PfamPF01422150708721IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MAGPAVDLRR QPPPQPQHLV SDTDSDSGSD SDIHHNRHDD LSNSIFKAYL ECHSSSSPSS  60
VDLAKIQSFL ASSSSGALSC LICLERIRRT DPTWSCTSLC FAVFHLVCIQ SWARQSLDLQ  120
AARAATRSSA SDTDTAVWNC PKCRSSYGKS EIPRRYICYC GKEEDPPGDN PWILPHSCGE  180
VCGRPLSNNC GHCCLLLCHP GPCAPCPKLV KALCFCGGVE DVRRCGHKQF SCGNACNRVL  240
DCDVHRCKEI CHDGACPPCR ERAVYSCCCD KVKEERDCCD RVFRCEAECK NMLNCGRHVC  300
EKGCHSEKCG LCPYQGKRTC PCGKKMYQGL ACDVTAPLCG STCDKLLACG YHRCPDRCHR  360
GPCLETCRIV VTKSCRCGGL RKQVPCHQEL VCERKCQGVR DCGRHACRRR CCDGDCPPCS  420
EICGRRLRCR NHKCPSPCHQ GACAPCPIMV TISCACGETR FEVPCGTETD QKPPRCRKLC  480
HVTPLCRHGP IIKPHRCHYG ACPPCKLPCE EEFSCGHKCR LRCHGPRPPP KVEFIVKPTK  540
KKLNIHSEST PGSPCPPCPE FLWKPCVGQH LGAERMMVCS DRTQFTCDNL CGNPLPCGNH  600
YCTRTCHALK VRSSVSGSDK RSLLSGSDCE ECDLPCEQER SPQCQHPCPL PCHPGDCPPC  660
KVLIKRSCHC GTMVHAFKCI SYNTLSEKDQ IKVRSCGGPC HRKMQNCTHL CPEICHPGQC  720
PLPDKCGKKV IVRCKCQTVK KELFCQDVQA MYRDKGSDPK DIPKNRFGIG VLPCNADCMS  780
KIRAAEATLQ QRKPKEADEK VEAAAEKNGP KRKKRRERGQ EAKQTSRLQK LVVTARKVVM  840
FVMFIVVLAA VSYCGYKGLL WLNDWMNQLE EQRLKSRRYP RI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1809815PKRKKRR
2811817RKKRRER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543729.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543726.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A087G5210.0A0A087G521_ARAAL; Uncharacterized protein
STRINGXP_010543726.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors