PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543317.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 287aa    MW: 32241.2 Da    PI: 8.3496
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.36.3e-2454134371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     + +Lr+++ +   +++k e+ +i+t++eva+e++s+               ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_010543317.1  54 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfattqndtlgsseefNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 134
                     5799999999...****9999******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.3E-958285IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.5E-3650138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-2752134IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-1955134IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-1755135IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.37E-31139242IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-38141276No hitNo description
SMARTSM011382.8E-47141286IPR014889Transcription factor DP, C-terminal
PfamPF087812.4E-33142264IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDIGCSGENH SPFVTPKRHN HSSTLDRTPG RRKLALDDEN ENGSEKKGHS RTAGGGLRQF  60
SVMVCQKLEA KKITTYKEVA DEIISDFATT QNDTLGSSEE FNEKNIRRRV YDALNVFMAL  120
DIIARDKKEI RWKGLPITRK KDVGEVNAER TKLVNSVQKK AAYLKELEEK VLGLQNLTSR  180
NQQVFEKSKC HTEGFTLPFI LVQTSPHATV EVEISEDMQL VHFDFNSTPF TLHDDAYILK  240
LMHQQKLQPN ANHHTSQHSS ALSSSSSCVV SGTTGPVVWN TNSTTTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2854136990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543317.10.0PREDICTED: transcription factor-like protein DPA
RefseqXP_010543316.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY31e-130DPA_ARATH; Transcription factor-like protein DPA
TrEMBLV4L9411e-133V4L941_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__159__AT5G02470.21e-130(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-118Transcription factor DP