PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542556.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 321aa    MW: 37188.8 Da    PI: 8.0277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.22.8e-48251573128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtdeelv +yL +kv++k++++ ++i++vdiyk++Pwd+p + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s   
  XP_010542556.1  25 PGFRFHPTDEELVGFYLSRKVQKKSIKM-DIIQHVDIYKFDPWDIP-RWSNTEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDcn 117
                     9***************************.99***************.56677899*************************************977 PP

             NAM  96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++ ++glkktLv+y g+a kg+kt+W+mhe+rl
  XP_010542556.1 118 ksatdqsNSVVIGLKKTLVYYLGSAGKGTKTEWMMHEFRL 157
                     66666555555***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.48423185IPR003441NAC domain
SuperFamilySSF1019419.02E-5224185IPR003441NAC domain
PfamPF023653.9E-2525157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLIGDSIVNH NNRREDDGGD IFPLPGFRFH PTDEELVGFY LSRKVQKKSI KMDIIQHVDI  60
YKFDPWDIPR WSNTEKEGYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDCNKSA  120
TDQSNSVVIG LKKTLVYYLG SAGKGTKTEW MMHEFRLPNT TYDNPNSTSP SQEAEVWTLC  180
RIFKRHVSCK KYTPDWRESA SAKHFRPHNK KPHTSSDSLR QETYINFGDI DDTNLPILPY  240
TDGKKNILDE NKTYEYRNMF HHSNQLSSMP PHDMQIGPTP LPVGPVHEFW NVLEDNDHVL  300
SYGNWDELRS MVEFAIGPSS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-452519119171NO APICAL MERISTEM PROTEIN
1ut4_B4e-452519119171NO APICAL MERISTEM PROTEIN
1ut7_A4e-452519119171NO APICAL MERISTEM PROTEIN
1ut7_B4e-452519119171NO APICAL MERISTEM PROTEIN
4dul_A4e-452519119171NAC domain-containing protein 19
4dul_B4e-452519119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542556.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542556.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK558e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLV4NQ841e-105V4NQ84_EUTSA; Uncharacterized protein
STRINGXP_010542556.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-105NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]