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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SBP | ||||||||
Protein Properties | Length: 128aa MW: 14482.2 Da PI: 9.4396 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.4e-41 | 38 | 113 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C+adl+eak+yhrrh+vCevh+ka +++v+g++qrfCqqCsrfhel efD +krsCr rLa+hnerrrk++ XP_010542291.1 38 CQAEKCTADLTEAKQYHRRHRVCEVHAKALSAMVAGVRQRFCQQCSRFHELVEFDGAKRSCRGRLAGHNERRRKSS 113 **************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-32 | 32 | 99 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.778 | 35 | 112 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-37 | 37 | 116 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-32 | 38 | 111 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MEGKRTQGQD KVAASYLAKE EEEEAAERAR DGVSSRLCQA EKCTADLTEA KQYHRRHRVC 60 EVHAKALSAM VAGVRQRFCQ QCSRFHELVE FDGAKRSCRG RLAGHNERRR KSSLDSSKQG 120 SDRRGITD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-37 | 36 | 111 | 9 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542291.1 | 1e-87 | PREDICTED: squamosa promoter-binding-like protein 5 | ||||
Swissprot | Q9S758 | 5e-51 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | D7KKE3 | 4e-47 | D7KKE3_ARALL; Squamosa promoter-binding-like protein | ||||
STRING | AT3G15270.1 | 1e-48 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-49 | squamosa promoter binding protein-like 5 |