PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541171.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 294aa    MW: 33282.6 Da    PI: 4.7019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-07168213555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ r+RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+  Lq
  XP_010541171.1 168 QSIAARQRRRRIAEKTQELGKLIPGG-----QKLNTAEMFQAAAKYVVFLQ 213
                     57888*******************86.....7**************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-10162228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.354163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-10164230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-4168213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSCLSYFSNW DPIQLQDCLT PDVDMFIPVN DSFLFQPKPQ PQQQHLCQEQ ASSFGFDPLG  60
SFSDSLLLPQ ETFCPNPNTD PLNLPQDLDS FFPAPKRQKI TEPSYQCNTL DHFANPNPNF  120
VDSYLDIVPE GSTTFPEFRI PDFPVAFDAG RADHTGCNNA KKTQLSAQSI AARQRRRRIA  180
EKTQELGKLI PGGQKLNTAE MFQAAAKYVV FLQAQVGILQ LMQSEMPQEN PNVEREIRAL  240
LASQTMQEKF SSEEVCLAPR KMVQTLAADE SIWKTPRMFQ DINRLLSAHE TDKF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541171.10.0PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD05e-96BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH485e-95D7LH48_ARALL; Predicted protein
STRINGXP_010541171.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]