PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 271aa    MW: 30644.3 Da    PI: 4.6823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183583355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  XP_010541160.1 35 YLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSMRG 83
                    88******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.16E-303492No hitNo description
PROSITE profilePS5103221.183493IPR001471AP2/ERF domain
SMARTSM003808.3E-313499IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-193593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-273593IPR001471AP2/ERF domain
PfamPF008471.4E-123583IPR001471AP2/ERF domain
PRINTSPR003674.8E-93546IPR001471AP2/ERF domain
PRINTSPR003674.8E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFKGNSKSG SSSKSKRSEQ KQQQQQQQRD DEIRYLGVRR RPWGRYAAEI RNPTTKERYW  60
LGTFDTAEEA ALAYDRAARS MRGSSNVART NFVYSDMPRG SSVTPFVSPD ESYRFISEIF  120
NSPNKVENYT YNNQYPLVNN QTPLHFSCNN NNNDSLNAEP VNVNVEGWFE GAECSYQTVD  180
SNVVQSHNHE LPPLPPSTCY GAELTLPQTD FYANSYLGQS SCQDVNGLNA AFGMEEFAFR  240
HNSFMDQDPL SCTGNDGLDL DFDSASGFFL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-183584353ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-1734871468Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541160.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ903e-79ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A3N6SY376e-81A0A3N6SY37_BRACR; Uncharacterized protein
TrEMBLA0A3P6DY606e-81A0A3P6DY60_BRAOL; Uncharacterized protein
STRINGXP_010541160.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]