PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540898.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 347aa    MW: 39896.4 Da    PI: 6.2453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.11.5e-48101591129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee....................vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                     lppGfrFhP+deelv++yL++k+++k ++ ++                     + e+d++++ePw+Lp  +k + kewyfFs rd+kya g r+n
  XP_010540898.1  10 LPPGFRFHPSDEELVCHYLRNKIRAKFNHHHDgggddddgheddaeanmknnDLVEIDLHTCEPWQLPDVAKLNVKEWYFFSFRDRKYAVGYRTN 104
                     79**********************999666556777778888888888887559**************8778899******************** PP

             NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     rat sgyWkatgkd+ v++  +++ vg++ktLvfy++rap+g kt+W+mhe+rle
  XP_010540898.1 105 RATVSGYWKATGKDRMVVDPrTRQIVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 159
                     ******************9956777***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-538177IPR003441NAC domain
PROSITE profilePS5100553.13910177IPR003441NAC domain
PfamPF023653.1E-2711158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGLKDIGAKL PPGFRFHPSD EELVCHYLRN KIRAKFNHHH DGGGDDDDGH EDDAEANMKN  60
NDLVEIDLHT CEPWQLPDVA KLNVKEWYFF SFRDRKYAVG YRTNRATVSG YWKATGKDRM  120
VVDPRTRQIV GMRKTLVFYR NRAPNGIKTT WIMHEFRLEC PNTPPMEDWV LCRVFNKCKE  180
SQLQEEESRF VISDNNLNYA PNYTHLPRPS PPSNDMDYHH HHQIPCGWGQ MMGHHRPSSS  240
PTSSNIHHTH HHDQSMEIPC GWDQMMETLS SSSGHCPQAH ESLLNMFYHS GVINVASTER  300
CDNEDNYKGM FSDMGLEKAC IGSSSSDILL ENDGLGFEID NTTADFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-431018217170NO APICAL MERISTEM PROTEIN
1ut4_B3e-431018217170NO APICAL MERISTEM PROTEIN
1ut7_A3e-431018217170NO APICAL MERISTEM PROTEIN
1ut7_B3e-431018217170NO APICAL MERISTEM PROTEIN
4dul_A3e-431018217170NAC domain-containing protein 19
4dul_B3e-431018217170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540898.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540898.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE66e-55NAC22_ARATH; NAC domain-containing protein 21/22
SwissprotQ9S8511e-54NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0A7DNN51e-125A0A0A7DNN5_BRANA; NAC transcription factor 74-2
TrEMBLA0A397L7881e-125A0A397L788_BRACM; Uncharacterized protein
STRINGXP_010540898.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-120NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  4. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  5. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  6. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  7. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  8. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  9. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  10. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  11. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]