PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540682.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-X1
Protein Properties Length: 1122aa    MW: 122259 Da    PI: 7.972
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.98.9e-08329347119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  XP_010540682.1 329 CGRHRCERTCHVGPCDPCQ 347
                     ******************6 PP

2zf-NF-X121.16.9e-07451468118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG H+C + CH G+Cp C
  XP_010540682.1 451 CGLHSCDEVCHAGDCPRC 468
                     ****************99 PP

3zf-NF-X118.64.1e-06548566119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_010540682.1 548 CGQHSCESLCHSGHCPPCL 566
                     ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.77E-7152222No hitNo description
PROSITE profilePS500168.796159220IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.376162218IPR001841Zinc finger, RING-type
PROSITE patternPS013590162217IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.02E-5251312No hitNo description
SMARTSM004380.023274292IPR000967Zinc finger, NF-X1-type
PfamPF014228.4276291IPR000967Zinc finger, NF-X1-type
CDDcd060081.21E-12319367No hitNo description
SMARTSM004384.0E-5329348IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-6329346IPR000967Zinc finger, NF-X1-type
CDDcd060084.71E-9383425No hitNo description
SMARTSM004383.8E-4393412IPR000967Zinc finger, NF-X1-type
PfamPF014223.8E-4393410IPR000967Zinc finger, NF-X1-type
CDDcd060085.70E-13441489No hitNo description
SMARTSM004386.2E-5451470IPR000967Zinc finger, NF-X1-type
PfamPF014222.5E-5451468IPR000967Zinc finger, NF-X1-type
SMARTSM00438100509540IPR000967Zinc finger, NF-X1-type
PfamPF0142219509520IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-8538579No hitNo description
SMARTSM004382.0E-4548567IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4548565IPR000967Zinc finger, NF-X1-type
CDDcd060081.75E-5595642No hitNo description
SMARTSM004380.045605623IPR000967Zinc finger, NF-X1-type
PfamPF014222.3605622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0089658688IPR000967Zinc finger, NF-X1-type
PfamPF014220.015658673IPR000967Zinc finger, NF-X1-type
CDDcd060087.11E-5686735No hitNo description
PfamPF0142211690716IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021697718IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MSSQVRRDRR ERPRFGPQGS RQTWVPRGAS TSVVVNEPLI ASNPDGNSSS FDANSAPSPV  60
NQPRRNNSPG LIPDNHNTGN TELGPPLVNR HHRQRRNNGS RQGPPPDNRQ RVGSRGHFAR  120
HVTQERATER GDNIDVVRSK DPNLPQLVQE IEDKLMKGAV ECMICYDMVR RSANIWSCSS  180
CYSIFHLNCI KRWARAPTSV DLAAEKDQGF NWRCPGCQSV QLTSSKEISY RCFCGKRKDP  240
PADPYLTPHS CGEPCGKLLE KEFAGTETSK EYHCPHVCVL QCHPGPCPPC KAFAPPRYCP  300
CGKKIITTRC SERRSVSTCG QPCDKLLGCG RHRCERTCHV GPCDPCQVLV NASCFCKKKA  360
EVVICGDMSI KGVVKAEDGV FSCSLTCGRL LGCGNHNCRE MCHPGPCGDC DLLPSMIKTC  420
YCGKTGLEEQ RCSCLDPIPS CPNICGKLLP CGLHSCDEVC HAGDCPRCLI KVNQKCRCGS  480
TSRTVECYKT TSEAENFVCE KPCGRKKNCG RHRCSERCCP LSNPKNDPTP RGWDPHVCQI  540
PCGKNLRCGQ HSCESLCHSG HCPPCLEMIF TDLTCACGKI SIPPPLPCGT PPPSCQFPCS  600
VPQPCGHAAS HACHFGDCPP CSVPVEKKCI GGHVVLRNIP CGLKDIRCTK LCGKTRRCGM  660
HACARTCHPE PCDTGDETEA GVRVSCGQTC GAPKRDCRHT CAALCHPSAP CPDLRCEFPV  720
TITCSCGRIT STVPCDAGGR SVDGFSADSL YEASVLQKLP VPLQPVETSG NRVPFGQRKL  780
TCDDECAKLD RKRVLQDAFD ITPPNLDALH FGENPAMTEI ISDLYRRDPK WVLAVEERCK  840
FLVLGKSRGN ASALKLHVFC PMQKDKRDAI RLIAERWKLA VNTAGWEPRR FTVIHVTPKS  900
KPPSRIIGVK GSVSLGTLHP PAFDPLVDMD PRLVVSLLDL PREANISGLV LRFGGECELV  960
WLNDKNAVAV FHDPARAATA MRRLDHGSVY QGAMAVQNVG QSSQASHAWG GIHGREGQRG  1020
GNPWKKALIH DDSWGPDDSP TVSSAREISK GNTPMVETLN RWSVLESGKD NTSVSAGNLD  1080
HKADETMVGV GGSSSSKEVG DLHVGGSVGD EDVADDWEEV CD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540682.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540682.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1J3FHQ40.0A0A1J3FHQ4_NOCCA; NF-X1-type zinc finger protein NFXL1
STRINGXP_010540682.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1