PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540589.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 453aa    MW: 49326.6 Da    PI: 7.0724
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.6e-36672122132
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 
                      g+kdrhsk+ T++g+RdRR+Rls+++a++f+dLqd+LG+d++sk++eWLl +a  ai +l++              s+  ++e           
  XP_010540589.1  67 SGGKDRHSKVLTSKGPRDRRIRLSVSTAIQFYDLQDRLGLDQPSKAVEWLLHAATDAIADLPSInafpdglsdermaSNGGNNEQ---------- 151
                     689*************************************************************555554443333211111111.......... PP

             TCP  84 nsssg.................kaaksaa.kskksqksaasalnlak.esrakarararertrekmri 132
                         +                 +   ++a +s +++++++sal+l++ e r kar+rarert++++  
  XP_010540589.1 152 ----ElgdfegqnhnmnqtlslS---KSAcSSTSETSKNSSALSLSRsEIRGKARERARERTAKEKER 212
                     ....1223333334455665332...333244455555555699999899**********87765544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.6E-3968211IPR005333Transcription factor, TCP
PROSITE profilePS5136930.39369127IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.926192210IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEVDDVQTQQ PSRKLPRFSN EVDADGGGLA RRADNSGDGD DEGMNNSLSL RSSWNPSSRI  60
VRVSRASGGK DRHSKVLTSK GPRDRRIRLS VSTAIQFYDL QDRLGLDQPS KAVEWLLHAA  120
TDAIADLPSI NAFPDGLSDE RMASNGGNNE QELGDFEGQN HNMNQTLSLS KSACSSTSET  180
SKNSSALSLS RSEIRGKARE RARERTAKEK EREKEREREN DVVQAPTPIQ PQSSFTQLLT  240
GNHHDEASPT GNHHNRHWTG TSSVEYFSPV QLIPPSSFSR THQAYNGPIH AGISPLPHFS  300
PFTISGENHH HHHHQEPLQS QHFSFLPPES LIQTAGSAAT ADYSTLNFSI SSPAAVAGGG  360
GVSGYNRGTL QSNSPSLFLN NNIQRFSPSS TTSSASSSSP MDSQSVPFFT ATPSLEHHHH  420
GHQIPATFDG RLYLYHGGDG GRCPDQKQGK GRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2074128155Putative transcription factor PCF6
5zkt_B2e-2074128155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540590.10.0PREDICTED: transcription factor TCP24
RefseqXP_010540591.10.0PREDICTED: transcription factor TCP24
TrEMBLA0A200Q1C16e-91A0A200Q1C1_9MAGN; Transcription factor
STRINGXP_010540589.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-38TCP family protein