PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 813aa    MW: 89948.6 Da    PI: 4.302
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-08348367626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ffa+ G+C +G +C+F H+
  XP_010540460.1 348 CDFFAK-GWCIRGKSCRFLHV 367
                     ******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.07342369IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087342368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5343366IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6347367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MDAEEIDVEE EEMEVEEVEE EEEEEDPEEE ELIEEVEEEV IEEEEEDPEE EELIEEVEGE  60
VIEEVEEEED PEEEEEVVEV EEEEVVEVEE EGEEQANQDV EESCNSPSKP SDLQEDVERG  120
SESNRLDGRL ASCSSRTEEF KSCPELNSDV RVLKSTSPSD EQSTTLKDTC LSFENSEKEL  180
TLTEDKGTQD AWEDEKDSEL PTGDSKVNNL SLENNDKPRP DNIELVSLGN TGISNTAGGK  240
TCDSVPSSSG VGQRPNGACN SGNKRSNIKS EDENSGTVSG NRAGDKVSDS VPGGADICQK  300
TDFACNSGKG RSNIIFEDEK RGIKSRPRSF SPGGEIKEPQ QKRAGIVCDF FAKGWCIRGK  360
SCRFLHVKDN SNNANQRQAS NNVAGNSEIR PGEERITSDN RVSGKSCEAK QNSEASLHSR  420
EKIYVVNSQA SQRFFSSKED MGFMWSSKDM GRERLKQNFG ADGLENRSLF FNGGDPSIPR  480
SSSVHGHRSS VSSSSKLDIV PSQPAWTRSF HTSVSASGGQ GQFDSGNKFY GSESLSHRDP  540
EGNAASKKAK VTSNDWEPSE PFRPSFVIPP SILPPCSTMY DPFLDGMDAQ NLEDDLLNDS  600
VSSKGEHTQK TSHHHKDGDS GSGPQAEDCN DDKSSSCSQN QYQEAAPEKN SEIHEMEMMA  660
TSVVEQNEVN PKKGKSSGPA HKKDVKRSRP AGGYDAWRKS NMSSNIKIAR ADKATDDVDG  720
EVRSDAGMKV MRNFRTALIE NIKELLKPIW REGRLSKDVH NMIVKKAVEK VISTAVQFHQ  780
VPTDTESIEQ YLSVSQTKIV KLVEGYVEKF RKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540460.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_010540461.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
RefseqXP_010540462.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
SwissprotQ84VG71e-161FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLD7LGF21e-158D7LGF2_ARALL; Frigida-essential 1
STRINGAT2G33835.11e-159(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-147C3H family protein