PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 332aa    MW: 37604.3 Da    PI: 6.2643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51211551129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeelv++yL+ k+ +   l  + +i+evd++++ePw+Lp+ ++ +ekewyf+s rd+ky+tg r+nrat++gyWk tgkdke+++
  XP_010539773.1  21 LPPGFRFHPTDEELVTFYLASKLFNGGgLFGFIHIPEVDLNHCEPWELPEVARMGEKEWYFYSLRDRKYPTGLRTNRATAAGYWKVTGKDKEIFA 115
                     79********************887775555688***************8888899*************************************** PP

             NAM  95 kkgel.....vglkktLvfykgrapkgektdWvmheyrle 129
                      +g +     +g+kktLvfykgrap+g kt+Wvmheyrle
  XP_010539773.1 116 GGGGApapelMGMKKTLVFYKGRAPRGIKTKWVMHEYRLE 155
                     8333345555****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5918173IPR003441NAC domain
PROSITE profilePS5100556.16421173IPR003441NAC domain
PfamPF023652.8E-2622154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLGVEDVMSE LAGEEGKERG LPPGFRFHPT DEELVTFYLA SKLFNGGGLF GFIHIPEVDL  60
NHCEPWELPE VARMGEKEWY FYSLRDRKYP TGLRTNRATA AGYWKVTGKD KEIFAGGGGA  120
PAPELMGMKK TLVFYKGRAP RGIKTKWVMH EYRLESLRHA CKEEWVICRV FNKTGDRRNV  180
RSHAQINNLD SSSSSNHHDG HHRRHHLTLP PLLEAPQPPA QLPSLLDHHG HEADELKTLI  240
NPEASQLDTI IFSSEQDDIC SVSKQLMKTE SSDNRSILRH QNPDFEDYYF KNAVLFQESD  300
FNLLGLSPSS SAPADLHVIF DSPAAESWPL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-471817612171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539773.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539773.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-121NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLB8XRZ51e-126B8XRZ5_CARHR; CUP-SHAPED COTYLEDON3
STRINGXP_010539771.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-115NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]