PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539244.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 463aa    MW: 52485 Da    PI: 4.8199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-24121522128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrd...kkyatgkrknratk...sgy.Wkatg 87 
                     p G+rF Ptd elv++yL +++++ +++   vi+++d+y+ ePw Lp +++   ee +wy++++ +    k++ gkr++r+++   +g+ W++t 
  XP_010539244.1  12 PLGLRFCPTDVELVTRYLPRRINSGPCDD-GVIRDMDVYSKEPWLLPhRRHPLlEEGHWYYYTELAplsGKTTAGKRAKRKVEedpDGRsWNSTA 105
                     78************************999.99***************4332223677*****9875111566678999997665675655***** PP

             NAM  88 kdkevlskkgelvglkktLvfy....kgrapkge...ktdWvmheyrl 128
                     ++ ++l  +g++vg k +L f     k++++kge     +W+m +yrl
  XP_010539244.1 106 RESDILL-NGQVVGRKMVLKFGdnkkKKKNEKGEsskARNWIMTQYRL 152
                     *******.99***********9766523333333222679******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-299165IPR003441NAC domain
PROSITE profilePS5100529.93111168IPR003441NAC domain
PfamPF023653.4E-1212152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSNNPSSSRR PPLGLRFCPT DVELVTRYLP RRINSGPCDD GVIRDMDVYS KEPWLLPHRR  60
HPLLEEGHWY YYTELAPLSG KTTAGKRAKR KVEEDPDGRS WNSTARESDI LLNGQVVGRK  120
MVLKFGDNKK KKKNEKGESS KARNWIMTQY RLLSASFQKH VICWIRDLSK EGSSSNEASS  180
SAWAQTTEDR APVPYMASSN GLSVQHHSPA VPSELEQTAA LPAVESVPSQ HWDYLYPPIQ  240
NPDMQPLLIQ HPNMPSFRIE DRNMPSIQEL YMPSLIQELN MPSLINHPIR PSRIQESNMP  300
SFWIEEPDMP SLLIQHPNMP SRIQEPDMSY LVEDPNMLWT ENLSLVPHAT GFTEVPSTGE  360
QPLVPYASNT VVAASPSELD TIPREAETEQ QGTNRGGIAV SEEREIWLSQ LVEHMTAEME  420
TPLETLNEES PLIEVPMFSW EYPSPFQQQA PPVAASARQE DED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1231569146NO APICAL MERISTEM PROTEIN
1ut4_B3e-1231569146NO APICAL MERISTEM PROTEIN
1ut7_A3e-1231569146NO APICAL MERISTEM PROTEIN
1ut7_B3e-1231569146NO APICAL MERISTEM PROTEIN
3swm_A3e-12315612149NAC domain-containing protein 19
3swm_B3e-12315612149NAC domain-containing protein 19
3swm_C3e-12315612149NAC domain-containing protein 19
3swm_D3e-12315612149NAC domain-containing protein 19
3swp_A3e-12315612149NAC domain-containing protein 19
3swp_B3e-12315612149NAC domain-containing protein 19
3swp_C3e-12315612149NAC domain-containing protein 19
3swp_D3e-12315612149NAC domain-containing protein 19
4dul_A3e-1231569146NAC domain-containing protein 19
4dul_B3e-1231569146NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539244.10.0PREDICTED: NAC domain-containing protein 55-like
STRINGXP_010539244.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.24e-13NAC domain containing protein 50