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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bZIP | ||||||||
Protein Properties | Length: 347aa MW: 38176.6 Da PI: 4.4609 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1e-10 | 180 | 229 | 4 | 53 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 k+ rr +NR AA rsR+RKk +++ Le+k+k Le e ++L l+ XP_010539032.1 180 AKKRRRQLRNRDAAVRSRERKKIYLKDLETKSKYLERECMRLGRVLQCFM 229 6999***********************************99976666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-7 | 174 | 241 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.9E-12 | 174 | 240 | No hit | No description |
PROSITE profile | PS50217 | 10.094 | 179 | 236 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.8E-9 | 180 | 236 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.63E-10 | 181 | 239 | No hit | No description |
CDD | cd14704 | 1.54E-18 | 182 | 233 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 184 | 199 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MADEIDCLDL FVDDSFFLDF DVPVLSDSPV VEDFSTSSPD SVSPWIGQIE SMLMKDDDDR 60 DHQACLGSDE KLVSDFLGDI LVDSPPGGSS SVDFAAAKVS DIPIITSPAD GSGTGEFLAD 120 KESDVSDDSG CRISKKEVAD VSAEKNSAGS DNPGNESSEK ESLDGPEARD DDEEEDDSVA 180 KKRRRQLRNR DAAVRSRERK KIYLKDLETK SKYLERECMR LGRVLQCFMA ENQHLRLFLQ 240 KGHKPYDASI AKQESAVLLW ESLLLVSLLW YLWSIIICQS PQPRLGSALL PPQANVVEAS 300 DPRSVAPKGR GISSKSSSST LTDDGKSRRC KASRPRMKPE SITCFAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 200 | KRRRQLRNRDAAVRSRERKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539032.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539032.1 | 0.0 | PREDICTED: bZIP transcription factor 60 | ||||
TrEMBL | A0A1J3I058 | 1e-70 | A0A1J3I058_NOCCA; BZIP transcription factor 60 | ||||
STRING | XP_010539032.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4634 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 5e-43 | basic region/leucine zipper motif 60 |