PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538371.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 290aa    MW: 33113.9 Da    PI: 6.1734
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.71.4e-5061351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yL+++ eg ++el evi+ +d+yk++Pw+Lp k  + +++kew+fF++rd+ky++g+r+nrat+sgyWkatgkd++v+
  XP_010538371.1   6 LPPGFRFHPTDEELVGYYLQRRNEGLEIEL-EVIPLIDLYKFDPWELPdKsFLPNRDKEWFFFCHRDRKYPNGSRANRATRSGYWKATGKDRRVI 99 
                     79****************************.99**************96445667999***********************************99 PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ ++ ++g kktLvfy grap g++t Wvm+eyrl
  XP_010538371.1 100 CHqSSPVTGYKKTLVFYLGRAPLGSRTGWVMNEYRL 135
                     97355569**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-584157IPR003441NAC domain
PROSITE profilePS5100556.9566158IPR003441NAC domain
PfamPF023651.1E-277135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGSSLPPGF RFHPTDEELV GYYLQRRNEG LEIELEVIPL IDLYKFDPWE LPDKSFLPNR  60
DKEWFFFCHR DRKYPNGSRA NRATRSGYWK ATGKDRRVIC HQSSPVTGYK KTLVFYLGRA  120
PLGSRTGWVM NEYRLCDDLS QGPNSFKGDF ALCRVVKRDD QMQKKGEARS NTVPNEPFDI  180
SCGASYPAKE SQSSSHAPCA LSETGSPRIW ASPEDLILES ASKLYWKAEE SASGQDLPNS  240
TRFGYPEFFT DPSSISNFNW EMEASSEISP NNGFLNYPEF HMDGHVHYQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52516416171NO APICAL MERISTEM PROTEIN
1ut4_B2e-52516416171NO APICAL MERISTEM PROTEIN
1ut7_A2e-52516416171NO APICAL MERISTEM PROTEIN
1ut7_B2e-52516416171NO APICAL MERISTEM PROTEIN
3swm_A2e-52516419174NAC domain-containing protein 19
3swm_B2e-52516419174NAC domain-containing protein 19
3swm_C2e-52516419174NAC domain-containing protein 19
3swm_D2e-52516419174NAC domain-containing protein 19
3swp_A2e-52516419174NAC domain-containing protein 19
3swp_B2e-52516419174NAC domain-containing protein 19
3swp_C2e-52516419174NAC domain-containing protein 19
3swp_D2e-52516419174NAC domain-containing protein 19
4dul_A2e-52516416171NAC domain-containing protein 19
4dul_B2e-52516416171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538371.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538371.10.0PREDICTED: NAC domain-containing protein 86
SwissprotO496971e-88NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3N7G2I21e-102A0A3N7G2I2_POPTR; Uncharacterized protein
STRINGXP_010538371.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.17e-98NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]