PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538165.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 253aa    MW: 28487 Da    PI: 4.9345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-183180255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  XP_010538165.1 31 KYLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAAMAYDRAARSMRG 80
                    799******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2323188IPR001471AP2/ERF domain
PfamPF008477.7E-133180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-293187IPR001471AP2/ERF domain
CDDcd000181.18E-313187No hitNo description
SuperFamilySSF541713.01E-213188IPR016177DNA-binding domain
SMARTSM003804.6E-343194IPR001471AP2/ERF domain
PRINTSPR003673.7E-93243IPR001471AP2/ERF domain
PRINTSPR003673.7E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEFNGVSKSG SSSKSRRTRI QQQQQQNDEI KYLGVRRRPW GRYAAEIRNP TTKERYWLGT  60
FDTAEEAAMA YDRAARSMRG STARTNFIYP DMPHGSSVTA CVSPDESNRL ISEIFNPTGQ  120
VENFAYNNQY PSTNNQSSIE FSFNNNDNLQ ANGWFHGVEC GYQTGYSNVV QSHSHELPPL  180
PPSTCVGAEL TLPQTENSYW DTPAVSVEAL GHCQDVNKFN DAFNMQDYAF GHNSLADQDT  240
LTHLDASSVF FFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-193287359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-1931871471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538165.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-77ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0D3D6B64e-77A0A0D3D6B6_BRAOL; Uncharacterized protein
STRINGXP_010538165.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]