PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 365aa    MW: 39898.2 Da    PI: 8.8641
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-333589155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  XP_010537820.1 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
                    79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3473292IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-323290IPR009057Homeodomain-like
SuperFamilySSF466891.68E-163490IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-233590IPR006447Myb domain, plants
PfamPF002491.2E-73787IPR001005SANT/Myb domain
PfamPF143793.3E-22131170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFHSKKPSSM SSSSHENRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEYNDH SAKDGPRASA LDLHRNTASS  120
SGMMRHSMNE MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYM QSILEKACQT LAGENMAAAA  180
AAVAGGGGGY KGNLGISSAF PASGPPPLSF PPFQDLNIYG NTDQLDQHFR QNIENNFTTG  240
ADTNIYLGKK GPNPFGTDVG KSMLMWPEDH LGRLHDLGLP PASSCQLDEH QIQIQMASHV  300
SPDLDSLSDI YNAKSGLSGD GLCEKKIEAN GGKLPERPSP RRSPLSPMMN PNGGMSAQGR  360
TSPFG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537820.10.0PREDICTED: myb family transcription factor APL-like isoform X2
SwissprotQ9SAK51e-180APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0D3ARQ10.0A0A0D3ARQ1_BRAOL; Uncharacterized protein (Fragment)
STRINGBra008411.1-P1e-179(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-144G2-like family protein