PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533763.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 379aa    MW: 43742.4 Da    PI: 6.6414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.58.7e-5671361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk+++k++e+ ++ik+vd+yk+ePwdL+   ++ + +++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++
  XP_010533763.1   7 VPPGFRFHPTDEELVDYYLRKKIASKRIEI-DFIKDVDLYKIEPWDLNDlcRIGNeDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 100
                     69****************************.99**************843555552556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s ++ lvg++ktLvfykgrap+g+k+dW+mheyrle
  XP_010533763.1 101 YS-RHCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-615157IPR003441NAC domain
PROSITE profilePS5100559.5317157IPR003441NAC domain
PfamPF023651.4E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNSFSNVPPG FRFHPTDEEL VDYYLRKKIA SKRIEIDFIK DVDLYKIEPW DLNDLCRIGN  60
EDQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSRHCLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPHQEEGWA VCRVFKKRLA AVRKMGEYET SPSHWYNDDH  180
LSFVSSELET SSPRRILMGH HHQPYGLNAA AYPIHNPNLQ RKQELELQHF NHLAQHHHHH  240
LLQLNEPLFL QLPQLESPKI QQANSNCNSL PYGTSSGNNH NANLQSSNLG NEEQMNQGQP  300
SFSSLYVNSG NDQAVDQVTD WRVLDKFVAS QLSNDEASAS GQNNDEEMNL LESETKRVSE  360
LGQEYDASTS SSCQIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49615814169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533763.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_010533764.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX20.0NAC7_ARATH; NAC domain-containing protein 7
TrEMBLR0IHL00.0R0IHL0_9BRAS; Uncharacterized protein
STRINGXP_010533763.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.10.0NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]