PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533371.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 260aa    MW: 29388.9 Da    PI: 9.5083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.6e-53141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv++++l++ ++i+evd++k++PwdLp      eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++
  XP_010533371.1  14 LPPGFRFHPTDEELVVQYLKRKVHSSPLPA-SIIPEVDVCKADPWDLPGG---LEKERYFFSTREAKYPNGSRSNRATGSGYWKATGIDKRVVTS 104
                     79****************************.89***************44...5789********************************999987 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  XP_010533371.1 105 rGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                     57788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6110160IPR003441NAC domain
PROSITE profilePS5100559.06314160IPR003441NAC domain
PfamPF023656.0E-2815138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVHSSP LPASIIPEVD VCKADPWDLP  60
GGLEKERYFF STREAKYPNG SRSNRATGSG YWKATGIDKR VVTSRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLAS PPPSSMGPTK NWVLCRIFLK KRGHNKSEDD VDSCKKNHNY  180
CDNDTNNDDG DHRNDPRKKS SPVLIDFMRK EWTTDLNSDP KSPSGSGSSG VTTEVFSDES  240
EDVDGSSSSC SSFNHFRRKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-531216618174NAC domain-containing protein 19
3swm_B2e-531216618174NAC domain-containing protein 19
3swm_C2e-531216618174NAC domain-containing protein 19
3swm_D2e-531216618174NAC domain-containing protein 19
3swp_A2e-531216618174NAC domain-containing protein 19
3swp_B2e-531216618174NAC domain-containing protein 19
3swp_C2e-531216618174NAC domain-containing protein 19
3swp_D2e-531216618174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010533371.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521426.10.0PREDICTED: NAC domain-containing protein 83-like
RefseqXP_010533371.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-117NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1J3I2371e-123A0A1J3I237_NOCCA; NAC transcription factor 29
TrEMBLA0A1J3K7S71e-123A0A1J3K7S7_NOCCA; NAC transcription factor 29 (Fragment)
STRINGXP_010521426.10.0(Tarenaya hassleriana)
STRINGXP_010533371.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-113NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]