PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524724.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 166aa    MW: 17668 Da    PI: 10.5145
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-195185135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  XP_010524724.1 51 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 85
                    ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-144596IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4664581IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-124685No hitNo description
Gene3DG3DSA:3.30.50.102.0E-154985IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.29E-125085No hitNo description
PROSITE patternPS0034405176IPR000679Zinc finger, GATA-type
PfamPF003201.1E-165185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLDPSEKVLD SEAMKRKCSA LDSNEESKSS SSSSSNGSVI NETRSEAKKT CADCGTSKTP  60
LWRGGPAGPK SLCNACGIRS RKKRRAVIAA AAGGGGSADK KLRKGGSGGN QNRNPKIGDS  120
LKQRLMELGR DVMMQRSTVE RQRRKLGEEE QAAVLLMALS YGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524724.11e-116PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG103e-64GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1J3DI503e-58A0A1J3DI50_NOCCA; GATA transcription factor 15
TrEMBLA0A1J3ELK93e-58A0A1J3ELK9_NOCCA; GATA transcription factor 15
TrEMBLR0HPE73e-58R0HPE7_9BRAS; Uncharacterized protein
STRINGXP_010524724.11e-115(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-54GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]