PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523113.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 333aa    MW: 37731.6 Da    PI: 6.9519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.12.9e-56161421129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv ++ +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ 
  XP_010523113.1  16 LPPGFRFHPTDEELITHYLHEKVLDSGFSA-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIHR- 108
                     79***************************9.89***************888999***************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfy+grapkg+kt+Wvmhe+rle
  XP_010523113.1 109 RKSLVGMKKTLVFYRGRAPKGQKTNWVMHEFRLE 142
                     999****************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6312166IPR003441NAC domain
PROSITE profilePS5100559.08116166IPR003441NAC domain
PfamPF023653.2E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEPICGFDKE DEQMDLPPGF RFHPTDEELI THYLHEKVLD SGFSAKAIGE VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIHRRK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PKTAKNEWVV CRVFQKSAGG NKIPISGLIR  180
IGSFKTGLDP SSLPPLTDFS SLYNDKTKPE PVVYVPCFSN PTENQGNTVL NSVQTNVLPR  240
IPLHQSHSVP VSEDLQSPNP DLIQEQTVLR AMMIENSGRQ SFKTSSVSQE TGVSTEINTD  300
VSSDFEFGLR QFDPREEPSS SAGPADIESF WIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-551317217174NAC domain-containing protein 19
3swm_B2e-551317217174NAC domain-containing protein 19
3swm_C2e-551317217174NAC domain-containing protein 19
3swm_D2e-551317217174NAC domain-containing protein 19
3swp_A2e-551317217174NAC domain-containing protein 19
3swp_B2e-551317217174NAC domain-containing protein 19
3swp_C2e-551317217174NAC domain-containing protein 19
3swp_D2e-551317217174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523113.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523113.10.0PREDICTED: NAC domain-containing protein 100-like isoform X2
SwissprotQ9FLJ20.0NC100_ARATH; NAC domain-containing protein 100
TrEMBLD7MV190.0D7MV19_ARALL; ANAC100/ATNAC5
STRINGXP_010523106.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.10.0NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]