PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522114.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 339aa    MW: 37312.8 Da    PI: 7.0229
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.5e-3524139189
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eaesss 79 
                     a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++               ss+++ ++ +a+++ 
  XP_010522114.1  24 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLNESqelalrdvqggkaaeSSDPNFQMvDAKDDD 118
                     589**************************************************************999999998887765555554444333333 PP

             TCP  80 ssasnsssg...........k 89 
                       +++++ +            
  XP_010522114.1 119 DDHHHQTVQfssslvaplanL 139
                     333333333444455555542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3025119IPR005333Transcription factor, TCP
PROSITE profilePS5136932.4292785IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGLKSSGSGG GEIVQVEGGH IVRATGRKDR HSKVFTSKGP RDRRVRLSAH TAIQFYDVQD  60
RLGYDRPSKA VDWLIKKAKS AIDKLNESQE LALRDVQGGK AAESSDPNFQ MVDAKDDDDD  120
HHHQTVQFSS SLVAPLANLD PEDAMKTFFP TSSTNSSINF QNYPHDIISR TANLNQDLGL  180
SLHPSFHGDS GQAGSSTDQT LFATFEANNF QRMSGWNSEL TPEQRGFLVS SSSHQPSVPT  240
LLNHQQTLFL GQGPPLLSHQ RGTLQSSFLQ PFRSWDHHTD HHHHHHQQNQ SSVFASQFGS  300
HGIMQGLSVH NRIHGEEGEG LGPHRPSASS SSPPHNSHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223285154Putative transcription factor PCF6
5zkt_B4e-223285154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522114.10.0PREDICTED: transcription factor TCP10
RefseqXP_010522115.10.0PREDICTED: transcription factor TCP10
SwissprotO822771e-85TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A1J3IRA73e-91A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRINGXP_010522114.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.18e-81TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]