PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520457.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family E2F/DP
Protein Properties Length: 374aa    MW: 41164.4 Da    PI: 4.319
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.4e-2752117171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  XP_010520457.1  52 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTL---QV--QKRRIYDITNVLEGIGLIEKTLKNRIQWKG 117
                     6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-2949119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-1752115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-3552117IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.1E-2554117IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.02E-46128234No hitNo description
SuperFamilySSF1440744.18E-32130234No hitNo description
PfamPF164214.7E-33133232IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVNSSLQTPV SSKGGKANKS SRSAKSNKSG MQASGSNTGS PGDNFAQGGT CRYDSSLGLL  60
TKKFINLIKQ AEDGILDLNK AADTLQVQKR RIYDITNVLE GIGLIEKTLK NRIQWKGLDV  120
SRPGETAESI ANLQEEIQNL TTEEAELDQR IREMQERLTG LSEDENNKRF LFVTEEDIKS  180
IPSFQNETLI AIRAPHGTTL EVPDPDEAGD YPQRRYRIIL RSTMGPIDVY LVSQFEETVE  240
EIHGANEHSH LPGTSGLLES QQTATLMEDL TGNNNMEWQE QDVAQRMSSD INSDDFVGGI  300
MKIVPSDFDV DVDYWLLSEA DDISITERWP SEPDVNSNLL GSHGQESAPG DTTLQQAQTP  360
SSPKAESSAV KSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-2548118374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520458.10.0PREDICTED: transcription factor E2FB-like isoform X3
RefseqXP_010520457.10.0PREDICTED: transcription factor E2FB-like isoform X3
RefseqXP_010520455.10.0PREDICTED: transcription factor E2FB-like isoform X2
RefseqXP_010520454.10.0PREDICTED: transcription factor E2FB-like isoform X1
SwissprotQ9FV710.0E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A087G8Y20.0A0A087G8Y2_ARAAL; Uncharacterized protein
STRINGBra006615.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-167E2F transcription factor 1