PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 430aa    MW: 46354.5 Da    PI: 7.41
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.73.1e-3654140394
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 
                     g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak+ai+el++++  ++ e+     + +a+ + ++++ +++
  XP_010519240.1  54 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTAIDELAELPPWNPAET----LRYAAA-NAKPRRTAKT 140
                     89*************************************************************33333222....122222.1122111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-3254124IPR005333Transcription factor, TCP
PROSITE profilePS5136934.43455113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MADTDSSAAT ILHHHRTSPP PSSRVGMRRL TAAAADGCGE IVEVQGGHIV RSMGRKDRHS  60
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTAI DELAELPPWN  120
PAETLRYAAA NAKPRRTAKT HQASPPPQQL PPPPPPPVTH EGQFSIEIGG ASVVGVTGED  180
NGSGFLPASL DSDSIADTIK SFFPVGGGGA CASTEAPHHL MQQSYHNPAP DLLSRTSSQN  240
QDLRLSLQSF QDHPPPLLLH HHQAEPVLFA GPNNPLGFDA STSAWEQSHH QQSHQSLEIG  300
RIQRLGVPDG GGGGFLFASP PATASFQPVF GQSQLFSSQR GPLQSINTPM IRAWFDPYHH  360
HHHHIAGDDL HGHSYHISPA VHQSAIPGIG FASQTGEFSG FRIPARIQGQ EEEHDGISNK  420
PSSASSISRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519240.10.0PREDICTED: transcription factor TCP4
SwissprotQ8LPR51e-156TCP4_ARATH; Transcription factor TCP4
TrEMBLR0HYP11e-162R0HYP1_9BRAS; Uncharacterized protein
STRINGscaffold_301743.11e-159(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-143TCP family protein