PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010518852.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 291aa    MW: 32441.6 Da    PI: 9.7638
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010518852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.2e-292575151
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                    kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQ
  XP_010518852.1 25 KPRLRWTADLHDRFVDAVTRLGGADKATPKSVLKLMGLKGLTLYHLKSHLQ 75
                    79************************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-272275IPR009057Homeodomain-like
PROSITE profilePS5129411.242282IPR017930Myb domain
TIGRFAMsTIGR015575.1E-212577IPR006447Myb domain, plants
SuperFamilySSF466893.4E-132577IPR009057Homeodomain-like
PfamPF002491.5E-72778IPR001005SANT/Myb domain
PfamPF143793.2E-18133177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERMNLGGGG IGYENGGVVM TRDPKPRLRW TADLHDRFVD AVTRLGGADK ATPKSVLKLM  60
GLKGLTLYHL KSHLQVLLLP THVLGQQQAK KQNRAEHDTE KGGSSYVQFD RHSQGAFSNS  120
SRIDGLQRNI PFGESLRHQV EVRQRLQEQL EVQKKLQRRI EAQGKYLLAL LDKAQKSLPT  180
YTNIPSDEDA TKGQSPYFNP KLSGLVEGNN GDEKNGKMDS ITGFPNKSES EDFRVSKQKE  240
KRETGDGDDK TDPGLVNFDL NSKTGCDLIT SGNFGVEMKM KPSVFADRDI R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518852.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9SAK51e-41APL_ARATH; Myb family transcription factor APL
TrEMBLC0SVS41e-114C0SVS4_ARATH; Putative uncharacterized protein At5g45580 (Fragment)
STRINGfgenesh1_pg.C_scaffold_80002361e-113(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124952530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-94G2-like family protein