PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046204t1
Common NameTCM_046204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 546aa    MW: 59633.6 Da    PI: 7.4227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046204t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30336394259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+g+H+h+
  Thecc1EG046204t1 336 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNFDPNIFIVTYTGDHTHP 394
                       699************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-30322396IPR003657WRKY domain
PROSITE profilePS5081132.466330396IPR003657WRKY domain
SuperFamilySSF1182904.58E-26333396IPR003657WRKY domain
SMARTSM007748.7E-37335395IPR003657WRKY domain
PfamPF031061.7E-25337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MTPEPLFAVK PSVKSQRFHS SNSLWKQRTP DHHPPRKMMN DGPTKSRRQV PRGVYSHGND  60
SPTAREVHHF SDEDACSVPN NCFCIEFPYR REDPKRKRRV KIGFLKVSRL IGVLEMAEDW  120
DLYAVVRSCS SAANTTATAS NNFTNENGSS CREDPLACLA SLKFEEEDDL FSFPNLSQLR  180
KSGSLQDSYK PFLPYADPTT TSTNQGIDPS SSSSVPGGSS GQHHQHQRLK QQQEQPTTTS  240
IGISPPLTPT SAPIFAFGQS GNQQPPQHVQ EQPQPQQQNP LHRQHQLQQR VQQQEGQRPA  300
AILPLRNMNS QAPRSRKRKN QQKRTVCHVA VDNLSSDPWA WRKYGQKPIK GSPYPRNYYR  360
CSSSKGCAAR KQVERSNFDP NIFIVTYTGD HTHPRPTHRN SLAGSTRNKL STIQKAASKD  420
SAPEALPSAS CSSPRSATSL SPTTPLSAPE DAAAPQHNTD GINGGEEESV DMTLETALDG  480
ESDEDDDPLI PNDHVDEDLF KGLEELVGGA DAGSTSSGLG TSPAFGDDFP SWGSGNSTAA  540
AGGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18319397280Disease resistance protein RRS1
5w3x_D1e-18319397280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972970.10.0PREDICTED: probable WRKY transcription factor 27 isoform X1
TrEMBLS1RTM80.0S1RTM8_THECC; WRKY DNA-binding protein 27, putative
STRINGEOY203080.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-59WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]