PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042730t1
Common NameTCM_042730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 228aa    MW: 25001.1 Da    PI: 4.5102
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042730t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-397106199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++
  Thecc1EG042730t1   7 SCGACKFLRRKCTSECVFAPYFCYDEaASHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQE 99 
                       6***********************9868***************************************************************** PP

            DUF260  93 elallke 99 
                       e++ l +
  Thecc1EG042730t1 100 EIEILIN 106
                       *997755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6686108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-377103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAASHFAAV HKVFGASNVS KLLLHLPMHN  60
RSDAAVTISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEILINQMAN HAADQVPSCG  120
NTQAATYPDG KIQFASLHET ISTVYYQDEQ AALPTNHPGL LTGNQILDAQ LCEPLPPSYE  180
WEDQNFLCNF YQNPPEINLE GVESGILIDY PCMGSSGTTT NWEGPSW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009269.11e-172LOB domain-containing protein 29
TrEMBLA0A061FTN71e-172A0A061FTN7_THECC; LOB domain-containing protein 29
STRINGPOPTR_0010s20800.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-59LOB domain-containing protein 33
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]